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Payroll

Record and track payroll easily within PIMSY using our HR features and payroll management features, regardless of how you pay your staff a salary, hourly, or per service code.


PIMSY Behavioral Health Payroll Benefits
Learn about the benefits that make PIMSY ideal for your practice’s payroll

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Accurate Productivity-Based Calculations

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Mileage and PTO Calculations

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Enhanced Security for Sensitive Payroll Data

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Cost Savings

PIMSY Payroll Features

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HIPAA-Compliant Reports

Payroll reports are automatically available for staff review and exclude PHI to ensure compliance. 

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Detailed Transaction Breakdowns

Transaction breakdowns provide payroll summaries for each employee.

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Global Payroll Overview

Overview easily allows a review of historical payroll transactions so you can make informed decisions.

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Security

Implement advanced security measures to safeguard payroll data from unauthorized access and breaches.

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Flexible Pay Structures

Calculate payroll based on each employee’s specific pay structure including percentage based, flat rates, and nonbillable time like training and staff meetings.

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Custom Pay Schedules

Schedule pay periods according to agency preference (weekly, bi-weekly, monthly, or custom). Organize pay by user groups, locations, or individuals.

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Detailed Payroll History

Maintain detailed payroll history for each team member.

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Automated Accruals

Automate accrual calculations per pay period, including PTO and vacation.

Commission & 1099 Payroll

Manage payroll for commission-based, 1099, and hourly employees.

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Productivity-Based

Track employee productivity, ensuring accurate payroll calculations.

Don’t just take our word for it

“We recently went through our first CARF International survey and, yesterday, we received great news that we are now CARF accredited. It required developing policy and procedure manuals, the employee handbook, and investing and implementing SaaS in Payroll/HR, LMS and EHR; as well as HIPAA compliant, business class office suite (M 365) and networks… thanks to the PIMSY team for implementing PIMSY as our Electronic Health Record!” 

– Devon J., Manager

“PIMSY is a very robust program that is adaptable to all agency sizes. Once you get to know PIMSY, you’ll wonder how you kept track of anything before it.”

– Catherine C., Systems Administrator

Frequently Asked Questions

Read some of our most common questions about PIMSY’s payroll features.

If a payer adjusts/recoups payments, will the administrator be alerted?

Yes. If a payer recoups a service, the payroll module automatically adjusts the next payroll, reducing administrative workload. If a payer reverses a denial and makes a payment, PIMSY accounts for it, ensuring accurate compensation for commission-based providers.

Can I control what payroll information employees see?

Yes! PIMSY allows you to customize payroll report settings, ensuring employees only see the relevant details.

How does PIMSY handle payroll adjustments for billing changes or service denials?

PIMSY EHR’s Payroll feature automatically adjusts payroll based on service denials, payer recoupments, and billing changes. This reduces administrative workload and ensures payroll accuracy.

Does PIMSY’s Payroll feature handle tax withholdings and benefits calculations?

No, PIMSY calculates payroll up to the gross amount. Payroll reports can be exported to QuickBooks or other payroll software for tax withholdings and benefits management. Ask us about our new integration with Paychex!

Why Choose PIMSY EHR for Payroll Management?

PIMSY EHR’s Payroll solution offers mental health agencies a secure and efficient solution for payroll processing to optimize administrative processes, reduce errors, and focus on providing high-quality client care.

Take the next step in streamlining payroll—experience the benefits of PIMSY EHR today!